In Genotyping by Sequencing for Crop Improvement, a team of distinguished researchers delivers an in-depth and current exploration of the latest advances in genotyping-by-sequencing (GBS) methods, the statistical approaches used to analyze GBS data, and its applications, including quantitative trait loci (QTL) mapping, genome-wide association studies (GWAS), and genomic selection (GS) in crop improvement. This edited volume includes insightful contributions on a variety of relevant topics, like advanced molecular markers, high-throughput genotyping platforms, whole genome resequencing, QTL mapping with advanced mapping populations, analytical pipelines for GBS analysis, and more.
The distinguished contributors explore traditional and advanced markers used in plant genotyping in extensive detail, and advanced genotyping platforms that cater to unique research purposes are discussed, as is the whole-genome resequencing (WGR) methodology. The included papers also examine the applications of these technologies in several different crop categories, including cereals, pulses, oilseeds, and commercial crops.
Perfect for practicing plant scientists with an interest in genotyping-by-sequencing technology, Genotyping by Sequencing for Crop Improvement will also earn a place in the libraries of researchers and students seeking a one-stop reference on the foundational aspects of—and recent advances in—genotyping-by-sequencing, genome-wide association studies, and genomic selection.
Humira Sonah, National Agri-Food Biotechnology Institute, Punjab, India Vinod Goyal, CCS Haryana Agriculture University, Hisar, India S. M. Shivaraj, Laval University, Quebec City, Canada
Chapter 1: Molecular marker techniques and recent advancements
Dharminder Bhatia and Gagandeep Singh Bajwa
Chapter 2: High-throughput genotyping platforms
Sandhya Sharma, Kuldeep Kumar, Kishor Tribhuvan, Reeta, Sandeep Kumar, Priyanka Jain, Swati Saxena, Joshita Vijayan, Harsha Shrivastava and Kishor Gaikwad
Chapter 3: Opportunity and challenges for whole genome re-sequencing based genotyping in plants
Surbhi Kumawat, Gaurav Raturi, Pallavi Dhiman, Sreeja Sudhakarn, Nitika Rajora, Vandana Thakaral, Himanshu Yadav, Gunashri Padalkar, Yogesh Sharma, Vinaykumar Rachappanavar and Manish Kumar
Chapter 4: QTL mapping using advanced mapping populations and high-throughput genotyping
Sweta Sinha*, Brij Kishore Kushwaha and Rupesh Deshmukh
Chapter 5: Genome-wide association study: approaches, applicability, and challenges
Akshay S Sakhare, Suneetha Kota, Santosh Rathod, Brajendra Parmar and Viswanathan C
Chapter 6: Genotyping of seeds while preserving their viability
Vinaykumar Rachappanavar, J K Sharma and Himanshu P
Chapter 7: Genomic selection: Advances, applicability, and challenges
Naina Garewal, Riya Joon, Ravneet Kaur and Kashmir Singh
Chapter 8: Analytical pipelines for the GBS analysis
Vinaykumar Rachappanavar, J K Sharma and Himanshu P
Chapter 9: Recent advances and applicability of GBS, GWAS, and GS in maize
Anshuman Tiwari, Shalu Choudhary, Jayendra Padiya, Abhijit Ubale, Venugopal Mikkilineni and Bharat Char
Chapter 10: Recent advances and applicability of GBS, GWAS, and GS in soybean
Prashant Raghunath Shingote, Dhananjay Narayanrao Gotarkar, Ravindra Ramrao Kale, Omkar Limbalkar, and Dhiraj Lalji Wasule
Chapter 11: Advances and applicability of genotyping technologies in cotton improvement
Shubham Bhardwaj, Vikas Devkar*, Amit Kumar, Alisha, Shivani Sharma, Rupesh K. Deshmukh and Gunvant B Patil
Chapter 12: Recent advances and applicability of GBS, GWAS, and GS in millet crops
Pankaj S. Mundada¥, Swapnil B. Kadam¥, Anupama A. Pable and Vitthal T. Barvkar
Chapter 13: Recent advances and applicability of GBS, GWAS, and GS in pigeon pea
Anuradha Singh and Nisha Singh
Chapter 14: Opportunity and challenges for high-throughput genotyping in sugarcane
Prathima. P. Thirugnanasambandam, Avinash Singode, Lakshmipathy Talambedu and Senthilkumar Shanmugavel
Chapter 15: Recent advances and applicability of GBS, GWAS, and GS in polyploid crops
Vandana Thakaral,*, Himanshu Yadav, Gunashri Padalkar, Surbhi Kumawat, Gaurav Raturi, Virender Kumar, Rushil Mandlik, Nitika Rajora and Manipal Singh
Chapter 16: Recent advances and applicability of GBS, GWAS, and GS in oilseed crops
Sanskriti Vats*, Yogesh Sharma, Virender Kumar, Rushil Mandlik, Surbhi Kumawat, Himanshu Yadav, Pallavi Dhiman, Vandana Thakral, Md Aminul Islam and Sreeja Sudhakaran
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